StringTie enables improved reconstruction of a transcriptome from RNA-seq reads | Nature Biotechnology
StringTie
Genomics & Informatics
Strawberry: Fast and accurate genome-guided transcript reconstruction and quantification from RNA-Seq | PLOS Computational Biology
How does Cufflinks compare to StringTie?
EPIGENE: genome-wide transcription unit annotation using a multivariate probabilistic model of histone modifications | Epigenetics & Chromatin | Full Text
A comparison of transcriptome analysis methods with reference genome | BMC Genomics | Full Text
Getting started with HISAT, StringTie, and Ballgown - Dave Tang's blog
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads | Nature Biotechnology
RNA-seq Analysis with Tuxedo Tools - Unipro UGENE User Manual - WIKI
Reference-based RNAseq data analysis (long)
11: A side-by-side comparison of the Tuxedo (left) and... | Download Scientific Diagram
RNA Sequencing Pipeline — GenPipes 4.3.2 documentation
Each tool X∈{Cufflinks, IsoLasso, CLASS, CIDANE, MITIE, StringTie } is... | Download Scientific Diagram
Strawberry: Fast and accurate genome-guided transcript reconstruction and quantification from RNA-Seq | PLOS Computational Biology
StringTie
Use of short-read RNA-Seq data to identify transcripts that can translate novel ORFs | bioRxiv
Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis | Nature Communications
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown. - Abstract - Europe PMC
Reference-based RNAseq data analysis (long)
RNA-seq analysis flow chart. An example RNA-seq analysis workflow is... | Download Scientific Diagram
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